Online Museum Collaboration

This project assisted the Exhibit Lab Collaborative, formerly the Environmental Exhibit Collaborative (EEC), in communicating between its member museums using web collaboration tools. The project team conducted an assessment at each museum to determine their needs and current state of communication, researched and recommended appropriate web collaboration tools, and assisted in implementing them. The team also provided training materials to the staff and carried out an evaluation to determine how well the recommended products met the needs of the museums

Cataloging 19th Century Periodical Images

This project created a database of images in nineteenth-century Scientific American issues, including relevant information as well as categorizing by subject matter. Sponsored by the American Antiquarian Society, the project developed an online electronic database using MySQL. In addition, the entries created by the previous team were edited, and volumes 10-12 were added to the database

Quantifying discordance between structure and function measurements in the clinical assessment of glaucoma

Objective: The visual field (VF) may be predicted from retinal nerve fibre layer thickness (RNFLT) using a Bayesian Radial Basis Function (BRBF). This study aimed to evaluate a new methodology to quantify and visualise discordance between structural and functional measurements in glaucomatous eyes. Methods: Five GDxVCC RNFLT scans and 5 Humphrey SITA VF tests were obtained from 50 glaucomatous eyes from 50 patients. A best available estimate of the ‘true’ VF was calculated as the point-wise median of these 5 replications. This ‘true’ VF was compared with every single RNFLT-predicted VF from BRBF and every single measured VF. Predictability of VFs from RNFLT was established from previous data. A structure-function pattern discordance map (PDM) and structure-function discordance index (SFDI; values 0 to 1) were established from the predictability limits for each structure-function measurement pair to quantify and visualise the discordance between the structure-predicted and measured VFs. Results: Mean absolute difference (MAD) between the structure-predicted and ‘true’ VFs was 3.9dB. MAD between single and ‘true’ VFs was 2.6dB. Mean of SFDI was 0.34 (SD 0.11). 39% of the structure-predicted VFs showed significant discordance (SFDI>0.3) from measured VFs. Conclusions: BRBF, on average, predicts the ‘true’ VF from RNFLT slightly less well than a measured VF from the 5 VFs compromising the ‘true’ VF. The PDM highlights locations with structure-function discordance, with the SFDI providing a summary index. These tools may help clinicians trust the mutually confirmatory structure-function measurements with good concordance, or identify unreliable ones with poor concordance

Precision is in the Eye of the Beholder: Application of Eye Fixation-Related Potentials to Information Systems Research

This is the final version. Available from Association for Information Systems via the DOI in this recordThis paper introduces the eye-fixation related potential (EFRP) method to IS research. The EFRP method allows one to synchronize eye tracking with electroencephalographic (EEG) recording to precisely capture users’ neural activity at the exact time at which they start to cognitively process a stimulus (e.g., event on the screen). This complements and overcomes some of the shortcomings of the traditional event related potential (ERP) method, which can only stamp the time at which a stimulus is presented to a user. Thus, we propose a method conjecture of the superiority of EFRP over ERP for capturing the cognitive processing of a stimulus when such cognitive processing is not necessarily synchronized with the time at which the stimulus appears. We illustrate the EFRP method with an experiment in a natural IS use context in which we asked users to read an industry report while email pop-up notifications arrived on their screen. The results support our proposed hypotheses and show three distinct neural processes associated with 1) the attentional reaction to email pop-up notification, 2) the cognitive processing of the email pop-up notification, and 3) the motor planning activity involved in opening or not the email. Furthermore, further analyses of the data gathered in the experiment serve to validate our method conjecture about the superiority of the EFRP method over the ERP in natural IS use contexts. In addition to the experiment, our study discusses important IS research questions that could be pursued with the aid of EFRP, and describes a set of guidelines to help IS researchers use this method.Social Sciences and Humanities Research Council of Canada (SSHRC)Natural Sciences and Engineering Research Council of CanadaFonds Québécois pour la Recherche sur la Société et la Culture (FQRSC)Fonds de recherche Nature et Technologies (FQRNT

Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci.

Genetic and environmental components as well as their interaction contribute to the risk of schizophrenia, making it highly relevant to include environmental factors in genetic studies of schizophrenia. This study comprises genome-wide association (GWA) and follow-up analyses of all individuals born in Denmark since 1981 and diagnosed with schizophrenia as well as controls from the same birth cohort. Furthermore, we present the first genome-wide interaction survey of single nucleotide polymorphisms (SNPs) and maternal cytomegalovirus (CMV) infection. The GWA analysis included 888 cases and 882 controls, and the follow-up investigation of the top GWA results was performed in independent Danish (1396 cases and 1803 controls) and German-Dutch (1169 cases, 3714 controls) samples. The SNPs most strongly associated in the single-marker analysis of the combined Danish samples were rs4757144 in ARNTL (P=3.78 × 10(-6)) and rs8057927 in CDH13 (P=1.39 × 10(-5)). Both genes have previously been linked to schizophrenia or other psychiatric disorders. The strongest associated SNP in the combined analysis, including Danish and German-Dutch samples, was rs12922317 in RUNDC2A (P=9.04 × 10(-7)). A region-based analysis summarizing independent signals in segments of 100 kb identified a new region-based genome-wide significant locus overlapping the gene ZEB1 (P=7.0 × 10(-7)). This signal was replicated in the follow-up analysis (P=2.3 × 10(-2)). Significant interaction with maternal CMV infection was found for rs7902091 (P(SNP × CMV)=7.3 × 10(-7)) in CTNNA3, a gene not previously implicated in schizophrenia, stressing the importance of including environmental factors in genetic studies

Supplementing High-Density SNP Microarrays for Additional Coverage of Disease-Related Genes: Addiction as a Paradigm

Commercial SNP microarrays now provide comprehensive and affordable coverage of the human genome. However, some diseases have biologically relevant genomic regions that may require additional coverage. Addiction, for example, is thought to be influenced by complex interactions among many relevant genes and pathways. We have assembled a list of 486 biologically relevant genes nominated by a panel of experts on addiction. We then added 424 genes that showed evidence of association with addiction phenotypes through mouse QTL mappings and gene co-expression analysis. We demonstrate that there are a substantial number of SNPs in these genes that are not well represented by commercial SNP platforms. We address this problem by introducing a publicly available SNP database for addiction. The database is annotated using numeric prioritization scores indicating the extent of biological relevance. The scores incorporate a number of factors such as SNP/gene functional properties (including synonymy and promoter regions), data from mouse systems genetics and measures of human/mouse evolutionary conservation. We then used HapMap genotyping data to determine if a SNP is tagged by a commercial microarray through linkage disequilibrium. This combination of biological prioritization scores and LD tagging annotation will enable addiction researchers to supplement commercial SNP microarrays to ensure comprehensive coverage of biologically relevant regions